Citation: Stephen B. Montgomery, Micha Sammeth, Maria Gutierrez-Arcelus, Radoslaw P. Lach, Catherine Ingle, James Nisbett, Roderic Guigo, Emmanouil T. Dermitzakis. "Transcriptome genetics using second generation sequencing in a Caucasian population".

Microarray data

Link to ArrayExpress E-MTAB-198

Normalized data

Genotype data

Sequence data

Link to ArrayExpress E-MTAB-197

FASTQ data

Sample information

Genotype data

Association data: Data for SNP by RNA-Seq Spearman associations

All associations
Exons (1.3Gb)
CRG Transcripts (270Mb)
 Significant associations (<=0.05 perm sig)
Exons
CRG Transcripts

Example line

SNP_label SNP_ID GENE_Label GENE_ID SNP_chromosome GENE_chromosome SNP_location GENE_location Distance rvalue pvalue -log10(pvalue)
rs2254669 - ENSE00001066442_ENSG00000131584 ENSE00001066442 1 1 1995968 1233132 762836 0.449 0.000319886288769 3.4950 0.05

Column 1: SNP ID, Column 3: Exon+Gene ID from EnsEMBL 54, Column 5+7: Gene location, Column 6+8: SNP location, Column 10: Rho value, Column 11: P-value, Column 12: -log10(P-value), Column 13: Permutation significance

SAM files: Mapping to hg18

all_sam_data.tar (50GB!!! files are gzipped within tar archive)

Contact: stephen.montgomery [at] unige.ch or emmanouil.dermitzakis [at] unige.ch